Gene2Promotor: Retrieve & analyze promoters
Gene2Promoter provides access to promoter sequences of all genes annotated in the available genomes. For each locus the chromosomal location and a short description of the corresponding gene is provided together with the promoters and transcripts. Several tasks for comparative analysis of the selected promoters can be started directly from the Gene2Promoter output. The number of input genes/sequences is limited to 1,000.
Alternatively Gene2Promoter offers large scale extraction of promoter sequences from the Genomatix Promoter Database GPD. Large scale extraction doesn't offer the interactive analysis from the result as described above, but allows you to retrieve
• complete sets of promoters for all genes of any of the available genomes
• custom sets of individual promotersby uploading a list of gene identifiers (up to 100,000)
• Optionally:
o Annotation for transcription factor binding sites (by MatInspector)
o Annotation for promoter modules (based on Genomatix proprietary libraries)
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